T1IGS3_STRMM protein (Strigamia maritima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1IGS3_STRMM

AMP-binding domain-containing protein. (787 aa)

Predicted Functional Partners:

T1IVJ9_STRMM

0.841

T1J1R9_STRMM

0.774

T1JL53_STRMM

0.727

T1J7R2_STRMM

0.724

T1IX06_STRMM

0.719

T1IX07_STRMM

0.719

T1ILY3_STRMM

0.710

T1IJV9_STRMM

0.685

T1JIV3_STRMM

0.667

T1IN94_STRMM

0.664

Your Current Organism:

Strigamia maritima

NCBI taxonomy Id: 126957
Other names: S. maritima

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T1IGS3_STRMM	T1IJV9_STRMM	T1IGS3	T1IJV9	AMP-binding domain-containing protein.	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	0.685
T1IGS3_STRMM	T1ILY3_STRMM	T1IGS3	T1ILY3	AMP-binding domain-containing protein.	TAN domain-containing protein.	0.710
T1IGS3_STRMM	T1IN94_STRMM	T1IGS3	T1IN94	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.664
T1IGS3_STRMM	T1IVJ9_STRMM	T1IGS3	T1IVJ9	AMP-binding domain-containing protein.	Uncharacterized protein.	0.841
T1IGS3_STRMM	T1IX06_STRMM	T1IGS3	T1IX06	AMP-binding domain-containing protein.	Uncharacterized protein.	0.719
T1IGS3_STRMM	T1IX07_STRMM	T1IGS3	T1IX07	AMP-binding domain-containing protein.	Uncharacterized protein.	0.719
T1IGS3_STRMM	T1J1R9_STRMM	T1IGS3	T1J1R9	AMP-binding domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.774
T1IGS3_STRMM	T1J7R2_STRMM	T1IGS3	T1J7R2	AMP-binding domain-containing protein.	Uncharacterized protein.	0.724
T1IGS3_STRMM	T1JIV3_STRMM	T1IGS3	T1JIV3	AMP-binding domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.667
T1IGS3_STRMM	T1JL53_STRMM	T1IGS3	T1JL53	AMP-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.727
T1IJV9_STRMM	T1IGS3_STRMM	T1IJV9	T1IGS3	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	AMP-binding domain-containing protein.	0.685
T1IJV9_STRMM	T1ILY3_STRMM	T1IJV9	T1ILY3	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	TAN domain-containing protein.	0.428
T1IJV9_STRMM	T1IN94_STRMM	T1IJV9	T1IN94	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	AMP-binding domain-containing protein.	0.582
T1IJV9_STRMM	T1IVJ9_STRMM	T1IJV9	T1IVJ9	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	Uncharacterized protein.	0.751
T1IJV9_STRMM	T1IX06_STRMM	T1IJV9	T1IX06	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	Uncharacterized protein.	0.641
T1IJV9_STRMM	T1IX07_STRMM	T1IJV9	T1IX07	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	Uncharacterized protein.	0.641
T1IJV9_STRMM	T1JIV3_STRMM	T1IJV9	T1JIV3	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.512
T1IJV9_STRMM	T1JL53_STRMM	T1IJV9	T1JL53	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.946
T1ILY3_STRMM	T1IGS3_STRMM	T1ILY3	T1IGS3	TAN domain-containing protein.	AMP-binding domain-containing protein.	0.710
T1ILY3_STRMM	T1IJV9_STRMM	T1ILY3	T1IJV9	TAN domain-containing protein.	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily.	0.428