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HX89_00540 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_00540" - Uncharacterized protein in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_00540Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)    
Predicted Functional Partners:
HX89_00535
Acetyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (72 aa)
              0.768
HX89_11770
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (361 aa)
   
 
  0.648
lysS
Lysine--tRNA ligase; Catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family (1108 aa)
 
     
  0.644
HX89_07025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (344 aa)
   
          0.632
HX89_14165
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (989 aa)
   
          0.576
HX89_04885
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)
   
          0.571
HX89_13735
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (396 aa)
   
          0.570
HX89_00025
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (238 aa)
   
          0.570
HX89_00580
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (771 aa)
   
          0.560
HX89_05090
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
   
          0.554
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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