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HX89_00705 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_00705" - Membrane protein in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_00705Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (179 aa)    
Predicted Functional Partners:
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (931 aa)
 
        0.869
HX89_06370
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (98 aa)
   
          0.745
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation (77 aa)
   
        0.732
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (713 aa)
   
   
  0.731
HX89_00685
RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (200 aa)
 
        0.722
HX89_06010
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (269 aa)
   
          0.715
HX89_04555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (575 aa)
   
        0.671
HX89_00635
Jag; Derived by automated computational analysis using gene prediction method- Protein Homology (165 aa)
   
        0.667
HX89_06380
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
   
          0.633
HX89_08995
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
   
        0.628
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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