STRINGSTRING
HX89_01325 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_01325" - DNA lyase in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_01325DNA lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPG family (287 aa)    
Predicted Functional Partners:
HX89_01320
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (399 aa)
              0.883
fpg
Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3’- and 5’-phosphates (348 aa)
   
   
0.864
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
   
   
  0.773
HX89_07320
5’-3’ exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
   
  0.609
HX89_06645
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)
   
   
  0.590
HX89_01315
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (85 aa)
              0.583
HX89_07865
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family (195 aa)
 
   
  0.487
HX89_06610
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (347 aa)
 
          0.448
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
Server load: low (4%) [HD]