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bioD protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"bioD" - ATP-dependent dethiobiotin synthetase BioD in Dermacoccus nishinomiyaensis
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second shell of interactors
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proteins of unknown 3D structure
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some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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bioDATP-dependent dethiobiotin synthetase BioD; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring (240 aa)    
Predicted Functional Partners:
HX89_01930
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (455 aa)
 
 
  0.998
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family (345 aa)
 
 
  0.997
HX89_01925
8-amino-7-oxononanoate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (438 aa)
   
  0.995
HX89_01910
Galactokinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GHMP kinase family. GalK subfamily (401 aa)
   
        0.851
HX89_01915
Galactose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (375 aa)
   
        0.850
HX89_08275
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (340 aa)
   
   
  0.758
ribA
Multifunctional fusion protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (411 aa)
         
  0.744
HX89_12580
7,8-dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin (323 aa)
         
  0.692
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (955 aa)
           
  0.610
HX89_01935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (136 aa)
              0.555
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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