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HX89_02400 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_02400" - DNA-binding protein in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
HX89_02400DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (471 aa)    
Predicted Functional Partners:
HX89_02395
CAAX protease; Derived by automated computational analysis using gene prediction method- Protein Homology (240 aa)
 
        0.924
HX89_06030
Epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
        0.875
HX89_07940
Magnesium chelatase; Derived by automated computational analysis using gene prediction method- Protein Homology (714 aa)
   
   
  0.831
HX89_02320
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide (693 aa)
   
   
  0.812
HX89_03480
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (189 aa)
   
 
  0.798
atpH
ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (270 aa)
     
      0.769
HX89_00040
Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DNA photolyase family (466 aa)
 
  0.752
AIF39655.1
Derived by automated computational analysis using gene prediction method- Protein Homology (466 aa)
 
  0.752
HX89_02455
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (493 aa)
 
   
  0.709
HX89_06115
Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
   
 
  0.690
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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