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HX89_02675 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_02675" - Uncharacterized protein in Dermacoccus nishinomiyaensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_02675Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (605 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis (451 aa)
 
   
  0.964
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP (329 aa)
 
   
  0.924
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (124 aa)
     
      0.864
rpsB
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the universal ribosomal protein uS2 family (308 aa)
     
      0.861
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (275 aa)
     
 
  0.859
HX89_02645
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (408 aa)
 
     
  0.827
HX89_02635
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)
 
     
  0.823
argS
Arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (594 aa)
   
      0.814
HX89_02640
Formate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family (878 aa)
 
     
  0.786
ychF
Ribosome-binding ATPase YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner (356 aa)
     
        0.775
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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