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HX89_06645 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_06645" - ATP-dependent DNA ligase in Dermacoccus nishinomiyaensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
HX89_06645ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)    
Predicted Functional Partners:
HX89_12510
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (292 aa)
   
  0.981
HX89_06610
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (347 aa)
     
  0.965
ku
Non-homologous end joining protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5’- and 3’- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD (264 aa)
 
   
  0.905
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
   
 
  0.821
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (364 aa)
   
 
  0.723
HX89_00670
Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3’-5’ exonuclease proofreading activity. The beta chain is required for initiation of replication as [...] (376 aa)
     
 
  0.675
HX89_05810
Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen (975 aa)
     
        0.659
HX89_07320
5’-3’ exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
 
 
  0.653
HX89_01325
DNA lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPG family (287 aa)
   
   
  0.590
HX89_09810
ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
           
  0.575
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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