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HX89_07320 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_07320" - 5'-3' exonuclease in Dermacoccus nishinomiyaensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
HX89_073205’-3’ exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)    
Predicted Functional Partners:
HX89_00670
Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3’-5’ exonuclease proofreading activity. The beta chain is required for initiation of replication as [...] (376 aa)
     
 
  0.742
HX89_07315
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily (168 aa)
              0.738
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (940 aa)
   
 
  0.722
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (364 aa)
 
 
  0.717
HX89_06645
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)
 
 
  0.653
HX89_06140
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (608 aa)
   
   
  0.635
HX89_05810
Vitamin B12-dependent ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen (975 aa)
   
 
  0.634
HX89_12690
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
   
 
  0.615
HX89_01325
DNA lyase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPG family (287 aa)
 
   
  0.609
HX89_09635
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (233 aa)
 
 
  0.604
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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