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HX89_07650 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_07650" - SURF1-like protein in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_07650SURF1-like protein; Derived by automated computational analysis using gene prediction method- Protein Homology (299 aa)    
Predicted Functional Partners:
HX89_07645
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
 
          0.859
HX89_07655
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (256 aa)
   
        0.745
HX89_02140
Cytochrome C oxidase assembly protein; Derived by automated computational analysis using gene prediction method- Protein Homology (726 aa)
 
        0.691
HX89_06115
Ubiquinol-cytochrome C reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
   
 
  0.646
HX89_12330
Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (581 aa)
   
        0.618
HX89_09840
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (163 aa)
   
          0.613
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily (325 aa)
 
 
  0.569
HX89_06120
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
   
  0.564
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
              0.539
HX89_06095
Cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown; Belongs to the cytochrome c oxidase bacterial subunit CtaF family (133 aa)
   
        0.532
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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