STRINGSTRING
HX89_07685 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_07685" - Nitrogen fixation protein NifU in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_07685Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)    
Predicted Functional Partners:
HX89_07690
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine (431 aa)
  0.999
HX89_13005
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method- Protein Homology (388 aa)
 
  0.991
HX89_05045
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
 
  0.991
sufC
Cysteine desulfurase; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
 
   
  0.971
HX89_05625
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method- Protein Homology (521 aa)
  0.966
HX89_07710
Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)
 
   
  0.914
HX89_07680
Metal-sulfur cluster biosynthetic enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
 
   
  0.914
HX89_07705
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
   
  0.895
HX89_07700
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (108 aa)
              0.775
dnaK
Chaperone protein DnaK; Acts as a chaperone (628 aa)
   
 
  0.760
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
Server load: low (4%) [HD]