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HX89_07725 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_07725" - ABC transporter in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_07725ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)    
Predicted Functional Partners:
HX89_07720
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (247 aa)
 
 
  0.924
HX89_06330
Phosphodiesterase; Derived by automated computational analysis using gene prediction method- Protein Homology (200 aa)
   
          0.627
HX89_04650
Anti-sigma factor; Derived by automated computational analysis using gene prediction method- Protein Homology (84 aa)
   
          0.607
HX89_05335
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (216 aa)
   
        0.584
HX89_06095
Cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown; Belongs to the cytochrome c oxidase bacterial subunit CtaF family (133 aa)
   
          0.579
HX89_07705
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
   
        0.554
HX89_07515
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (66 aa)
   
          0.546
HX89_07710
Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)
              0.542
HX89_07700
Ferredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (108 aa)
              0.542
HX89_12225
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (133 aa)
   
        0.527
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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