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cobS protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"cobS" - Adenosylcobinamide-GDP ribazoletransferase in Dermacoccus nishinomiyaensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobSAdenosylcobinamide-GDP ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5’-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5’-phosphate; Belongs to the CobS family (273 aa)    
Predicted Functional Partners:
HX89_07965
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
 
 
  0.999
HX89_07945
Cobinamide adenolsyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (204 aa)
 
 
  0.981
HX89_07915
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the precorrin methyltransferase family (525 aa)
 
   
  0.967
HX89_08925
Ribonuclease HI; Derived by automated computational analysis using gene prediction method- Protein Homology (414 aa)
   
 
  0.961
HX89_07935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (458 aa)
 
   
  0.927
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group (306 aa)
 
   
  0.925
HX89_04870
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
 
   
    0.924
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation (483 aa)
 
   
  0.895
HX89_07955
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (251 aa)
   
   
  0.880
HX89_12380
Uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (549 aa)
   
   
  0.819
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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