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carB protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"carB" - Carbamoyl-phosphate synthase large chain in Dermacoccus nishinomiyaensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
carBCarbamoyl-phosphate synthase large chain; Four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method- Protein Homology (1102 aa)    
Predicted Functional Partners:
carA
Carbamoyl-phosphate synthase small chain; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the CarA family (399 aa)
  0.999
pyrB
Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ATCase/OTCase family (313 aa)
  0.999
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily (434 aa)
 
  0.997
HX89_08330
Orotidine 5’-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the OMP decarboxylase family. Type 2 subfamily (294 aa)
   
   
  0.994
argG
Argininosuccinate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the argininosuccinate synthase family. Type 2 subfamily (472 aa)
 
  0.992
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine (540 aa)
 
 
  0.975
HX89_08595
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline (310 aa)
 
  0.974
HX89_08145
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1511 aa)
   
 
  0.966
HX89_08755
Glutamine synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (444 aa)
 
 
  0.933
HX89_06000
Glutamine synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology (474 aa)
 
 
  0.932
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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