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HX89_08415 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_08415" - Putative pre-16S rRNA nuclease in Dermacoccus nishinomiyaensis
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
HX89_08415Putative pre-16S rRNA nuclease; Could be a nuclease involved in processing of the 5’-end of pre-16S rRNA (170 aa)    
Predicted Functional Partners:
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction- alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain (904 aa)
 
        0.882
HX89_08285
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (489 aa)
   
        0.605
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (940 aa)
              0.543
ribA
Multifunctional fusion protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (411 aa)
              0.526
HX89_09950
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (187 aa)
 
   
  0.513
HX89_07620
Cyanophycin synthetase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the MurCDEF family (943 aa)
              0.461
HX89_08425
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (558 aa)
   
        0.462
HX89_08430
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (697 aa)
              0.444
HX89_08440
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
              0.414
HX89_08435
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
              0.410
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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