STRINGSTRING
HX89_09660 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_09660" - UPF0109 protein HX89_09660 in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_09660UPF0109 protein HX89_09660; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0109 family (80 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS16 family (159 aa)
   
   
  0.904
HX89_00635
Jag; Derived by automated computational analysis using gene prediction method- Protein Homology (165 aa)
   
 
  0.656
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family (394 aa)
   
        0.653
rimM
Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family (190 aa)
   
   
  0.641
glyQ
Multifunctional fusion protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1015 aa)
              0.584
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (121 aa)
   
        0.539
HX89_09670
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (512 aa)
              0.448
HX89_09620
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
 
          0.417
HX89_09795
Metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (193 aa)
 
          0.407
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
Server load: low (14%) [HD]