STRINGSTRING
HX89_09930 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_09930" - Uncharacterized protein in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_09930Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (590 aa)    
Predicted Functional Partners:
HX89_09175
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)
 
        0.774
HX89_12725
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (517 aa)
 
          0.602
HX89_06540
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (193 aa)
   
        0.559
HX89_09925
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)
              0.519
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
   
 
  0.512
HX89_05755
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (323 aa)
 
        0.502
HX89_07320
5’-3’ exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (308 aa)
   
 
  0.468
HX89_05750
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (782 aa)
   
 
  0.468
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1298 aa)
     
 
  0.456
HX89_12355
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (155 aa)
   
          0.453
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
Server load: low (9%) [HD]