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HX89_10055 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_10055" - Type II secretion system protein F in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_10055Type II secretion system protein F; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)    
Predicted Functional Partners:
HX89_10050
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
          0.974
HX89_10045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (73 aa)
 
          0.943
HX89_10060
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)
 
   
  0.941
HX89_10040
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
 
          0.895
HX89_10120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
 
          0.769
HX89_10125
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (71 aa)
   
          0.732
HX89_10130
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
   
          0.675
HX89_10630
2’-5’ RNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)
   
          0.459
HX89_00725
Nuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (186 aa)
   
          0.444
HX89_05595
Branched-chain amino acid transporter AzlD; Derived by automated computational analysis using gene prediction method- Protein Homology (101 aa)
   
          0.421
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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