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HX89_10180 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_10180" - Transcriptional regulator in Dermacoccus nishinomiyaensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
HX89_10180Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)    
Predicted Functional Partners:
HX89_10175
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (598 aa)
  0.998
HX89_10170
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (596 aa)
   
   
  0.925
HX89_11800
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
  0.902
HX89_01700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (475 aa)
 
  0.796
HX89_02515
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
  0.771
HX89_02830
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (508 aa)
 
  0.726
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (501 aa)
   
     
  0.665
mfd
Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1209 aa)
 
     
  0.528
HX89_12865
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (879 aa)
 
 
  0.513
HX89_09810
ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
 
   
  0.477
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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