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HX89_10630 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_10630" - 2'-5' RNA ligase in Dermacoccus nishinomiyaensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_106302’-5’ RNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (170 aa)    
Predicted Functional Partners:
trpS
Tryptophan--tRNA ligase; Derived by automated computational analysis using gene prediction method- Protein Homology (347 aa)
              0.877
HX89_10625
Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
              0.528
HX89_10640
Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)
         
  0.518
HX89_10615
Succinate dehydrogenase iron-sulfur subunit; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family (246 aa)
         
  0.503
HX89_08275
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (340 aa)
   
        0.487
sdhA
Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method- Protein Homology (691 aa)
              0.477
HX89_10055
Type II secretion system protein F; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
   
          0.459
HX89_10125
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (71 aa)
   
          0.432
HX89_07645
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
   
          0.432
HX89_08760
Protease; Derived by automated computational analysis using gene prediction method- Protein Homology (773 aa)
   
          0.430
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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