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HX89_11680 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_11680" - Transglycosylase in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_11680Transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology (248 aa)    
Predicted Functional Partners:
HX89_00370
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
       
  0.620
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (940 aa)
   
        0.615
HX89_00405
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (455 aa)
   
          0.615
HX89_03405
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
   
        0.596
HX89_06195
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (673 aa)
         
  0.595
HX89_08285
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (489 aa)
   
        0.594
HX89_10010
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
       
  0.587
HX89_01405
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
   
     
  0.566
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (282 aa)
   
   
  0.563
HX89_11685
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (515 aa)
 
          0.541
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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