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HX89_11955 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_11955" - DEAD/DEAH box helicase in Dermacoccus nishinomiyaensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_11955DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (870 aa)    
Predicted Functional Partners:
HX89_06535
3’-5’ exonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
   
 
  0.785
rpsA
30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method- Protein Homology (499 aa)
   
 
  0.716
HX89_07055
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)
   
          0.627
HX89_08905
Ribonuclease II; Derived by automated computational analysis using gene prediction method- Protein Homology (493 aa)
     
 
  0.551
HX89_07355
Peptidyl-prolyl cis-trans isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
 
      0.521
HX89_05835
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (1320 aa)
 
 
  0.508
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (297 aa)
     
      0.493
rph
Ribonuclease PH; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (255 aa)
     
 
  0.480
HX89_07775
Preprotein translocase subunit SecG; Derived by automated computational analysis using gene prediction method- Protein Homology (80 aa)
 
     
  0.474
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (196 aa)
     
 
  0.455
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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