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HX89_12810 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_12810" - Crp/Fnr family transcriptional regulator in Dermacoccus nishinomiyaensis
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_12810Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (339 aa)
     
 
  0.947
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (87 aa)
   
 
 
  0.857
HX89_10425
Guanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (333 aa)
 
 
  0.849
HX89_08145
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1511 aa)
   
   
  0.767
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination, leaving a 3’-terminal unsaturated sugar and a product with a terminal 5’-phosphate (277 aa)
 
   
  0.733
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (550 aa)
     
 
  0.722
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1298 aa)
       
 
  0.678
HX89_09670
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (512 aa)
           
  0.664
HX89_12800
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (226 aa)
   
        0.661
HX89_07375
Pup deamidase/depupylase; Derived by automated computational analysis using gene prediction method- Protein Homology (505 aa)
   
        0.659
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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