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HX89_12945 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_12945" - Uncharacterized protein in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_12945Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)    
Predicted Functional Partners:
HX89_12940
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (74 aa)
              0.845
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
   
   
  0.693
HX89_10985
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)
     
        0.646
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (297 aa)
   
   
  0.541
HX89_00670
Beta sliding clamp; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3’-5’ exonuclease proofreading activity. The beta chain is required for initiation of replication as [...] (376 aa)
     
 
  0.523
HX89_04920
Permease; Derived by automated computational analysis using gene prediction method- Protein Homology (367 aa)
   
          0.501
HX89_12400
Glutaredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (100 aa)
 
   
  0.496
HX89_06225
DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the DNA polymerase type-C family. DnaE2 subfamily (1248 aa)
   
 
  0.496
HX89_05985
DNA-directed DNA polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (1182 aa)
   
 
  0.496
HX89_13065
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1151 aa)
     
 
  0.494
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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