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HX89_12985 protein (Dermacoccus nishinomiyaensis) - STRING interaction network
"HX89_12985" - XRE family transcriptional regulator in Dermacoccus nishinomiyaensis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HX89_12985XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)    
Predicted Functional Partners:
HX89_08275
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (340 aa)
           
  0.656
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
         
  0.625
HX89_12990
Amine oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (564 aa)
              0.621
ribA
Multifunctional fusion protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (411 aa)
           
  0.621
HX89_12995
Amino acid permease; Derived by automated computational analysis using gene prediction method- Protein Homology (506 aa)
         
  0.606
HX89_12965
Agmatinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the arginase family (340 aa)
 
     
  0.570
HX89_13000
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
          0.465
HX89_12960
Acetolactate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the TPP enzyme family (583 aa)
 
          0.419
Your Current Organism:
Dermacoccus nishinomiyaensis
NCBI taxonomy Id: 1274
Other names: ATCC 29093, CCM 2140, CCUG 33028, CIP 81.71, D. nishinomiyaensis, DSM 20448, Dermacoccus nishinomiyaensis, Dermacoccus nishinomiyensis, Dermatococcus nishinomiyaensis, Dermatococcus nishinomiyensis, IEGM 393, IFO 15356, JCM 11613, LMG 14222, Micrococcus nishinomiyaensis, Micrococcus nishinomyaensis, NBRC 15356, NCTC 11039
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