STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adhDPutative alcohol dehydrogenase D. (369 aa)    
Predicted Functional Partners:
idnD
L-idonate 5-dehydrogenase (NAD(P)(+)).
  
 
 0.941
yjmD
Putative zinc-type alcohol dehydrogenase-like protein YjmD.
  
 
0.842
adh
Alcohol dehydrogenase.
  
 
0.840
arnC1
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
 
     0.823
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
 
  0.810
polS
Sorbitol dehydrogenase.
   
 0.757
bfmBAA
2-oxoisovalerate dehydrogenase subunit alpha.
  
  
 0.736
csoR1
Copper-sensing transcriptional repressor CsoR.
  
  
 0.698
csoR2
Copper-sensing transcriptional repressor CsoR.
  
  
 0.663
AXFE_25280
NADH oxidase.
 
  
 0.649
Your Current Organism:
Acidithrix ferrooxidans
NCBI taxonomy Id: 1280514
Other names: A. ferrooxidans, DSM 28176, JCM 19728, acid streamer bacterium Py-F3, strain PY-F3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.