STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC03031.1RNA polymerase sigma-70 factor, ECF subfamily. (190 aa)    
Predicted Functional Partners:
SDC03073.1
FecR family protein.
 
  0.837
SDD26353.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.747
SDC03000.1
Hypothetical protein.
  
 
  0.704
SDD16902.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.694
SDD16865.1
FecR family protein.
  
  0.692
SDD35684.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.688
SDD90632.1
FecR family protein.
  
  0.672
SDD03577.1
FecR family protein.
  
  0.671
SDD49268.1
FecR family protein.
  
  0.666
SDD05096.1
FecR family protein.
  
  0.665
Your Current Organism:
Niabella drilacis
NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.