STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD93980.1Transglutaminase-like superfamily protein. (640 aa)    
Predicted Functional Partners:
SDD93952.1
Transglutaminase-like superfamily protein.
 
     0.953
SDD75143.1
Outer membrane protein assembly factor BamA.
 
     0.631
SDD15109.1
Hypothetical protein.
 
     0.589
SDC12456.1
Protein of unknown function.
  
     0.509
SDD75239.1
Predicted metal-dependent phosphohydrolase, HD superfamily.
  
     0.508
SDD93920.1
Hypothetical protein.
       0.479
SDD75111.1
Hypothetical protein.
 
     0.472
SDD52608.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.445
SDD56918.1
Hypothetical protein.
  
     0.412
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
       0.412
Your Current Organism:
Niabella drilacis
NCBI taxonomy Id: 1285928
Other names: CCM 8410, DSM 25811, LMG 26954, LMG:26954, N. drilacis, Niabella drilacis Glaeser et al. 2013, Niabella sp. E90, strain E90
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.