STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001556105_02271Unannotated protein. (1028 aa)    
Predicted Functional Partners:
GCA_001556105_02273
Unannotated protein.
  0.991
GCA_001556105_03045
Unannotated protein.
 
  0.939
GCA_001556105_00244
Unannotated protein.
  
  0.907
GCA_001556105_01379
Unannotated protein.
  
  0.896
GCA_001556105_01967
Unannotated protein.
 
  0.885
GCA_001556105_00641
Unannotated protein.
  
  0.884
GCA_001556105_02176
Unannotated protein.
  
  0.884
GCA_001556105_02821
Unannotated protein.
 
  0.880
GCA_001556105_00438
Unannotated protein.
  
 0.879
GCA_001556105_02178
Unannotated protein.
 
 0.870
Your Current Organism:
Pseudoxanthomonas mexicana
NCBI taxonomy Id: 128785
Other names: ATCC 700993, CCUG 49454, CIP 106674, JCM 11524, NBRC 101034, P. mexicana, Pseudomonas sp. WO24, Pseudoxanthomonas mexicana Thierry et al. 2004, Pseudoxanthomonas sp. UR374_02, strain AMX 26B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.