STRINGSTRING
lcdH protein (Staphylococcus xylosus) - STRING interaction network
"lcdH" - L-carnitine dehydrogenase in Staphylococcus xylosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdHL-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine (320 aa)    
Predicted Functional Partners:
AID41916.1
annotation not available (157 aa)
        0.996
AID41914.1
NADPH-quinone reductase; FIG01108584 (296 aa)
 
   
  0.978
AID41716.1
annotation not available (157 aa)
        0.950
menB
1,4-dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) (272 aa)
            0.799
AID42021.1
annotation not available (155 aa)
 
        0.784
AID43555.1
annotation not available (380 aa)
 
 
  0.707
AID41788.1
annotation not available (384 aa)
 
 
  0.689
AID43908.1
annotation not available (394 aa)
 
 
  0.682
AID41913.1
annotation not available (182 aa)
 
          0.677
AID43726.1
annotation not available (1500 aa)
         
  0.607
Your Current Organism:
Staphylococcus xylosus
NCBI taxonomy Id: 1288
Other names: ATCC 29971, CCUG 7324, CIP 81.66, DSM 20266, HAMBI 2057, JCM 2418, NCTC 11043, NRRL B-14776, S. xylosus, Staphylococcus xylosus
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