Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein; Homology with SAV2140 (127 aa)
Predicted Functional Partners:
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway (287 aa)
EVE domain-containing protein; Homology with SAV2141 (455 aa)
Uncharacterized protein; Homology with SAV1840 (187 aa)
annotation not available (154 aa)
annotation not available (167 aa)
FIG00743178 (321 aa)
Uncharacterized protein; FIG01107852 (227 aa)
Lysostaphin resistance protein A; FIG01108370 (459 aa)
DNA starvation/stationary phase protection protein; Iron-binding ferritin-like antioxidant protein; Ferroxidase; Belongs to the Dps family (149 aa)