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prfA protein (Staphylococcus xylosus) - STRING interaction network
"prfA" - Peptide chain release factor 1 in Staphylococcus xylosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prfAPeptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (358 aa)    
Predicted Functional Partners:
AID42233.1
annotation not available (237 aa)
 
  0.984
rplQ
annotation not available (122 aa)
 
 
  0.963
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (145 aa)
 
      0.961
rpmA
annotation not available (94 aa)
   
 
  0.954
tdk
annotation not available (199 aa)
   
   
  0.949
rpmE2
annotation not available (85 aa)
   
 
  0.948
rpsP
annotation not available (88 aa)
 
 
  0.944
rpsI
annotation not available (130 aa)
 
      0.943
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (116 aa)
 
      0.937
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (207 aa)
 
      0.936
Your Current Organism:
Staphylococcus xylosus
NCBI taxonomy Id: 1288
Other names: ATCC 29971, CCUG 7324, CIP 81.66, DSM 20266, HAMBI 2057, JCM 2418, NCTC 11043, NRRL B-14776, S. xylosus, Staphylococcus xylosus
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