Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein; FIG01108262 (98 aa)
Predicted Functional Partners:
UPF0349 protein AST15_03630; FIG01108150; Belongs to the UPF0349 family (78 aa)
annotation not available (99 aa)
UPF0738 protein AST15_03335; FIG01108049; Belongs to the UPF0738 family (115 aa)
Uncharacterized protein; Homology with SAV2097 (151 aa)
annotation not available (349 aa)
Uncharacterized protein; Homology with SAV1865 (364 aa)
Cytochrome C biogenesis protein CcdC; FIG01108097 (155 aa)
Uncharacterized protein; Homology with OB0894 (96 aa)
annotation not available (262 aa)
Glycerol-3-phosphate acyltransferase; Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP (202 aa)