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rny protein (Staphylococcus xylosus) - STRING interaction network
"rny" - Ribonuclease Y in Staphylococcus xylosus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRibonuclease Y; Endoribonuclease that initiates mRNA decay (519 aa)    
Predicted Functional Partners:
AID43711.1
annotation not available (267 aa)
 
          0.717
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (697 aa)
     
 
  0.690
cshA
DEAD-box ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5’- and 3’-directions, has RNA- dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily (508 aa)
     
 
  0.677
dacA
Diadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria (268 aa)
   
     
  0.591
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (242 aa)
           
  0.585
AID42532.1
Oligoribonuclease; FIG146085 (311 aa)
 
     
  0.510
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (89 aa)
         
  0.508
AID42779.1
annotation not available (372 aa)
         
  0.481
AID42829.1
annotation not available (299 aa)
         
  0.471
AID42947.1
Metallophosphoesterase; FIG006542 (262 aa)
         
  0.448
Your Current Organism:
Staphylococcus xylosus
NCBI taxonomy Id: 1288
Other names: ATCC 29971, CCUG 7324, CIP 81.66, DSM 20266, HAMBI 2057, JCM 2418, NCTC 11043, NRRL B-14776, S. xylosus, Staphylococcus xylosus
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