STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000812685_03094Unannotated protein. (96 aa)    
Predicted Functional Partners:
GCA_000812685_01293
Unannotated protein.
   
 0.992
GCA_000812685_01113
Unannotated protein.
    
 0.763
GCA_000812685_00285
Unannotated protein.
  
  
 0.737
GCA_000812685_00877
Unannotated protein.
    
 0.646
GCA_000812685_02112
Unannotated protein.
 
  
 0.637
GCA_000812685_02111
Unannotated protein.
   
 0.620
GCA_000812685_03116
Unannotated protein.
  
 
 0.615
GCA_000812685_00446
Unannotated protein.
  
 
 0.600
GCA_000812685_02042
Unannotated protein.
    
 0.596
GCA_000812685_03095
Unannotated protein.
       0.588
Your Current Organism:
Halocynthiibacter namhaensis
NCBI taxonomy Id: 1290553
Other names: H. namhaensis, Halocynthiibacter namhaensis Kim et al. 2014, KCTC 32362, NBRC 109999, Rhodobacteraceae bacterium RA2-3, strain RA2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.