STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47029.1COG0598 Mg2+ and Co2+ transporters; Cl binding site [ion binding]; CorA-like Mg2+ transporter protein; pfam01544; Mg2 transporter protein CorA family protein [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_127; identified by MetaGeneAnnotator; putative; oligomer interface [polypeptide binding]; uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family; cd12827. (302 aa)    
Predicted Functional Partners:
GAK47028.1
Transcription regulator; Gene_126; identified by MetaGeneAnnotator; putative.
       0.609
GAK47030.1
FMN reductase; Gene_128; identified by MetaGeneAnnotator; putative.
       0.532
GAK47027.1
Asparagine synthetase; Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a..; cd00712; Ligand Binding Site [chemical binding]; Molecular Tunnel; The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes [...]
       0.432
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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