STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI22649.1COG3522 Uncharacterized protein conserved in bacteria. (443 aa)    
Predicted Functional Partners:
AGI22648.1
Putative outer membrane protein; COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.989
AGI22650.1
COG3521 Uncharacterized protein conserved in bacteria.
 
  
 0.972
AGI22651.1
COG3456 Uncharacterized conserved protein, contains FHA domain.
 
  
 0.966
AGI22647.1
Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.
 
  
 0.956
AGI22656.1
COG3519 Uncharacterized protein conserved in bacteria.
 
 
 0.953
AGI22644.1
Rhs element Vgr protein; COG3501 Uncharacterized protein conserved in bacteria.
 
  
 0.940
AGI24844.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.935
AGI22655.1
COG3520 Uncharacterized protein conserved in bacteria.
 
  
 0.925
AGI22666.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.921
AGI22646.1
COG0631 Serine/threonine protein phosphatase.
 
  
 0.916
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.