STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI24841.1Type VI secretion protein DotU; COG3455 Uncharacterized protein conserved in bacteria. (256 aa)    
Predicted Functional Partners:
AGI24842.1
COG3522 Uncharacterized protein conserved in bacteria.
 
  
 0.969
AGI24840.1
Type VI secretion protein IcmF; COG3523 Uncharacterized protein conserved in bacteria.
 
 
 0.967
AGI24839.1
COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.962
AGI22648.1
Putative outer membrane protein; COG3455 Uncharacterized protein conserved in bacteria.
  
  
  0.959
AGI24845.1
COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.940
AGI24844.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.920
AGI24843.1
COG0515 Serine/threonine protein kinase.
 
   
 0.907
AGI22665.1
COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.900
AGI24848.1
Type VI secretion protein VasA; COG3519 Uncharacterized protein conserved in bacteria.
 
  
 0.898
AGI24849.1
COG3520 Uncharacterized protein conserved in bacteria.
 
  
 0.888
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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