STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGI24848.1Type VI secretion protein VasA; COG3519 Uncharacterized protein conserved in bacteria. (608 aa)    
Predicted Functional Partners:
AGI24849.1
COG3520 Uncharacterized protein conserved in bacteria.
 
  
 0.967
AGI24846.1
COG3157 Hemolysin-coregulated protein (uncharacterized).
 
  
 0.963
AGI22648.1
Putative outer membrane protein; COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.961
AGI24850.1
COG0542 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
 
  
 0.951
AGI24845.1
COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.943
AGI24844.1
COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.941
AGI24842.1
COG3522 Uncharacterized protein conserved in bacteria.
 
 
 0.918
AGI22649.1
COG3522 Uncharacterized protein conserved in bacteria.
 
 
 0.904
AGI24841.1
Type VI secretion protein DotU; COG3455 Uncharacterized protein conserved in bacteria.
 
  
 0.898
AGI24839.1
COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.885
Your Current Organism:
Pseudomonas sp. ATCC 13867
NCBI taxonomy Id: 1294143
Other names: P. sp. ATCC 13867, Pseudomonas denitrificans ATCC 13867
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.