Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:			Neighborhood	Gene Fusion	Cooccurence	Coexpression	Experiments	Databases	Textmining	[Homology]	Score
	105619535	annotation not available (399 aa)
Predicted Functional Partners:
	105620940	annotation not available (367 aa)									0.995
	105621807	annotation not available (363 aa)									0.940
	105624976	annotation not available (226 aa)									0.868
	105622185	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (472 aa)									0.824
	105624729	annotation not available (159 aa)									0.801
	105623771	annotation not available (377 aa)									0.715
	105620675	annotation not available (192 aa)									0.708
	105622691	annotation not available (233 aa)									0.697
	105626798	annotation not available (437 aa)									0.678
	105626630	annotation not available (234 aa)									0.675

Your Current Organism:

Atta cephalotes

NCBI taxonomy Id: 12957
Other names: A. cephalotes, Atta cephalotes

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
105619535	105620675	ACEP13340-PA	ACEP25483-PA	annotation not available	annotation not available	0.708
105619535	105620940	ACEP13340-PA	ACEP12699-PA	annotation not available	annotation not available	0.995
105619535	105621807	ACEP13340-PA	ACEP13769-PA	annotation not available	annotation not available	0.940
105619535	105622185	ACEP13340-PA	ACEP21159-PA	annotation not available	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)	0.824
105619535	105622691	ACEP13340-PA	ACEP21965-PA	annotation not available	annotation not available	0.697
105619535	105623771	ACEP13340-PA	ACEP17144-PA	annotation not available	annotation not available	0.715
105619535	105624729	ACEP13340-PA	ACEP28018-PA	annotation not available	annotation not available	0.801
105619535	105624976	ACEP13340-PA	ACEP11954-PA	annotation not available	annotation not available	0.868
105619535	105626630	ACEP13340-PA	ACEP18955-PA	annotation not available	annotation not available	0.675
105619535	105626798	ACEP13340-PA	ACEP27878-PA	annotation not available	annotation not available	0.678
105620675	105619535	ACEP25483-PA	ACEP13340-PA	annotation not available	annotation not available	0.708
105620675	105620940	ACEP25483-PA	ACEP12699-PA	annotation not available	annotation not available	0.796
105620675	105621807	ACEP25483-PA	ACEP13769-PA	annotation not available	annotation not available	0.925
105620675	105624976	ACEP25483-PA	ACEP11954-PA	annotation not available	annotation not available	0.429
105620940	105619535	ACEP12699-PA	ACEP13340-PA	annotation not available	annotation not available	0.995
105620940	105620675	ACEP12699-PA	ACEP25483-PA	annotation not available	annotation not available	0.796
105620940	105621807	ACEP12699-PA	ACEP13769-PA	annotation not available	annotation not available	0.418
105620940	105624976	ACEP12699-PA	ACEP11954-PA	annotation not available	annotation not available	0.919
105620940	105626798	ACEP12699-PA	ACEP27878-PA	annotation not available	annotation not available	0.680
105621807	105619535	ACEP13769-PA	ACEP13340-PA	annotation not available	annotation not available	0.940

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Network

Cooccurrence

Experiments

Coexpression

Textmining

Neighborhood

Databases

Fusion

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