STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT71895.1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
SFT99908.1
GAF domain-containing protein.
 
     0.785
SFT51316.1
ANTAR domain-containing protein.
 
     0.652
SFT90624.1
GAF domain-containing protein.
 
     0.641
SFU08990.1
GAF domain-containing protein.
 
     0.592
SFT99537.1
Protein of unknown function.
  
     0.578
SFT37296.1
Protein of unknown function.
  
     0.551
SFT71543.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
     0.550
SFT41622.1
TIGR03086 family protein.
  
     0.532
SFT70503.1
GAF domain-containing protein.
 
     0.532
SFT70478.1
GAF domain-containing protein.
 
     0.518
Your Current Organism:
Geodermatophilus amargosae
NCBI taxonomy Id: 1296565
Other names: ATCC 25081, CCUG 62971, DSM 46136, G. amargosae, Geodermatophilus amargosae Montero-Calasanz et al. 2014, Geodermatophilus obscurus subsp. amargosae, Geodermatophilus sp. DSM 46136, JCM 3153, KCTC 9360, MTCC 11559, NBRC 13316, NRRL B-3578, strain G12
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