STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000930Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)    
Predicted Functional Partners:
J056_000614
Glutamate decarboxylase.
  
 0.945
J056_000871
Succinate-semialdehyde dehydrogenase.
 
 0.942
J056_001597
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.942
J056_000206
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.942
J056_000253
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.942
J056_003686
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.931
J056_004801
Aldedh domain-containing protein.
 
 
 
 0.929
J056_000612
Tyrosine decarboxylase 1.
 
 0.927
J056_000573
Pantoate--beta-alanine ligase.
     
 0.906
J056_000826
Biotin synthase.
 
    
 0.896
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.