STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_004691Pre-mRNA-splicing factor cwf25. (380 aa)    
Predicted Functional Partners:
J056_002378
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 0.997
J056_001280
Pre-mRNA-processing factor 17.
    
 0.997
J056_004833
Pre-mRNA-splicing factor cwf16.
   
 0.994
J056_002344
Pre-mRNA-splicing factor CEF1.
    
 
 0.993
J056_001452
U5 small nuclear ribonucleoprotein kDa helicase.
    
 
 0.992
J056_004668
Protein BUD31-like protein.
    
 
 0.990
J056_002899
U-box domain-containing protein 72.
    
 
 0.987
J056_002303
Pre-mRNA-splicing factor CWC2.
   
 
 0.987
J056_003909
Pre-mRNA-splicing factor CWC22.
   
 0.981
J056_002318
Pre-mRNA-splicing factor syf2.
   
 0.974
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.