STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002385Lysine-specific demethylase 4B. (755 aa)    
Predicted Functional Partners:
J056_004218
Ubiquitin-like protein pmt3/smt3.
    
 0.967
J056_004824
SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.959
J056_004412
E3 SUMO-protein ligase pli1.
   
 0.958
J056_000414
Ubiquitin-40S ribosomal protein S27a.
    
 0.957
J056_003207
Polyubiquitin-A.
    
 0.956
J056_004613
Ubiquitin-60S ribosomal protein L40.
    
  0.956
J056_003007
Uncharacterized protein.
    
  0.956
J056_003742
Ubiquitin-like domain-containing protein.
    
 0.956
J056_004537
DNA repair protein RAD50.
    
  0.950
J056_002936
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
  0.950
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.