STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003839Gluconolactonase. (398 aa)    
Predicted Functional Partners:
J056_004700
L-gulonolactone oxidase.
     
 0.900
J056_003620
Gluconokinase; Belongs to the gluconokinase GntK/GntV family.
     
  0.900
J056_002961
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
  
  
 0.815
J056_003074
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
  
 0.750
J056_002983
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
    0.729
J056_002602
Eukaryotic translation initiation factor 5B.
  
  
 0.677
J056_004165
Tr-type G domain-containing protein.
  
  
 0.677
J056_003758
DNA-directed RNA polymerase II subunit RPB3.
   
  
 0.647
J056_004247
DNA-directed RNA polymerases I and III subunit RPAC1.
   
  
 0.647
J056_001488
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
  
 0.644
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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