STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003007Uncharacterized protein. (571 aa)    
Predicted Functional Partners:
J056_002615
40S ribosomal protein S19-A.
   
 0.990
J056_004806
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.990
J056_003982
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.990
J056_002440
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.989
J056_004694
Elongation factor 3; Belongs to the universal ribosomal protein uL22 family.
   
   0.989
J056_001763
40S ribosomal protein S4-A.
   
 0.989
J056_002027
mRNA export factor elf1.
    
   0.989
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.988
J056_000655
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 0.988
J056_000701
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
 0.988
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.