STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_002923L-type lectin-like domain-containing protein. (314 aa)    
Predicted Functional Partners:
J056_004765
Protein transport protein SEC23.
   
 0.808
J056_004808
Endoplasmic reticulum vesicle protein 25.
   
 0.721
J056_003590
Endosomal protein P24B.
   
 0.714
J056_003766
ER lumen protein-retaining receptor.
 
 
  
 0.703
J056_002026
Protein transport protein bet1.
   
 
 0.703
J056_002563
Protein transport protein SEC22; Belongs to the synaptobrevin family.
    
 0.682
J056_003607
Protein transport protein SEC24.
    
 0.678
J056_004600
Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.
   
 
 0.672
J056_000954
Small COPII coat GTPase SAR1.
   
 
 0.670
J056_001188
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
   
 0.659
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.