STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_003952Pumilio-like protein 2. (578 aa)    
Predicted Functional Partners:
J056_001967
CCR4-NOT transcription complex subunit 7.
    
 
 0.855
J056_000924
Kinesin heavy chain; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
 
  
   0.828
J056_004655
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
   
 
 0.639
J056_003640
Glucose-repressible alcohol dehydrogenase transcriptional effector.
   
 
 0.621
J056_003354
Cytochrome c oxidase copper chaperone.
    
 
 0.590
J056_003412
Pumilio-like proteiny domain family member 6.
    
 
 0.577
J056_002442
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.496
J056_001537
Uncharacterized protein.
    
 
 0.466
J056_002278
Ankyrin repeat protein nuc-2.
    
 0.464
J056_000565
CCR4-NOT transcription complex subunit 1.
   
 
 0.460
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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