J056_000008 protein (Wallemia ichthyophaga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J056_000008

Uncharacterized protein. (252 aa)

Predicted Functional Partners:

J056_000921

0.489

J056_003260

0.474

J056_000718

0.458

J056_004346

0.458

J056_004681

0.449

J056_001165

0.435

J056_002343

0.427

J056_001774

0.413

J056_002278

0.411

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J056_000008	J056_000718	R9AR33	R9AEG1	Uncharacterized protein.	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.458
J056_000008	J056_000921	R9AR33	R9ADY8	Uncharacterized protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.489
J056_000008	J056_001165	R9AR33	R9AIR8	Uncharacterized protein.	Developmental regulator flbA.	0.435
J056_000008	J056_001774	R9AR33	R9ABA0	Uncharacterized protein.	Cell division control protein 31.	0.413
J056_000008	J056_002278	R9AR33	R9AQ67	Uncharacterized protein.	Ankyrin repeat protein nuc-2.	0.411
J056_000008	J056_002343	R9AR33	R9AAH9	Uncharacterized protein.	UBA domain-containing protein 7.	0.427
J056_000008	J056_003260	R9AR33	R9AKF5	Uncharacterized protein.	AP-2 complex subunit mu-A; Belongs to the adaptor complexes medium subunit family.	0.474
J056_000008	J056_004346	R9AR33	R9AHF2	Uncharacterized protein.	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.458
J056_000008	J056_004681	R9AR33	R9AF70	Uncharacterized protein.	PH domain-containing protein.	0.449
J056_000718	J056_000008	R9AEG1	R9AR33	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.458
J056_000718	J056_000921	R9AEG1	R9ADY8	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.471
J056_000718	J056_001774	R9AEG1	R9ABA0	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Cell division control protein 31.	0.487
J056_000921	J056_000008	R9ADY8	R9AR33	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.489
J056_000921	J056_000718	R9ADY8	R9AEG1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.471
J056_000921	J056_001774	R9ADY8	R9ABA0	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Cell division control protein 31.	0.810
J056_000921	J056_004346	R9ADY8	R9AHF2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.469
J056_001165	J056_000008	R9AIR8	R9AR33	Developmental regulator flbA.	Uncharacterized protein.	0.435
J056_001774	J056_000008	R9ABA0	R9AR33	Cell division control protein 31.	Uncharacterized protein.	0.413
J056_001774	J056_000718	R9ABA0	R9AEG1	Cell division control protein 31.	Myosin-2A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.487
J056_001774	J056_000921	R9ABA0	R9ADY8	Cell division control protein 31.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.810