STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J056_000268Uroporphyrinogen decarboxylase. (376 aa)    
Predicted Functional Partners:
J056_004826
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.993
J056_001340
Uncharacterized protein.
  
 0.987
J056_002332
Uroporphyrinogen-III synthase.
  
 
 0.985
J056_002093
Putative uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.971
J056_003267
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.924
J056_000532
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 
 0.732
J056_002504
Uncharacterized protein.
   
  
 0.654
J056_000826
Biotin synthase.
   
 
 0.639
J056_002492
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
      
 0.611
J056_000111
GATA-type domain-containing protein.
   
  
 0.494
Your Current Organism:
Wallemia ichthyophaga
NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994
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